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Table 1 Current clinical classifications of myeloid malignancies and their associated driver mutations, secondary mutations, and physiology [3, 5, 16, 18, 21, 41, 83,84,85,86,87]

From: Epigenomic insights and computational advances in hematologic malignancies

Condition

Subtype

Driver mutations

Other mutations

Physiology

MPN

ET5,83–85

JAK2V617F, CALR, MPL

ASXL1, SRSF2, IDH2/EZH2, SETBP1, TET2

Thrombocytosis; proliferation of mature megakaryocytes in BM

PV 5,83–85

JAK2, JAK2V617F

ASXL1, SRSF2, IDH2/EZH2, SETBP1, TET2

Elevated hemoglobin, hematocrit, or red blood cell mass; panmyelosis; no megakaryocytic atypia

PMF 5,83–85

JAK2, CALR, MPL

ASXL1, SRSF2, IDH2/EZH2, SETBP1, TET2

Megakaryocytic proliferation and atypia in BM; fibrosis in BM; anemia, leukocytosis, high LDH

CNL 5,83–85

CSF3R

SETBP1, ASXL1, SRSF2

Persistent neutrophilia; granulocytes at segmented stage in PB

CML5,21,41,83–85

BCR/ABL1

*Rare - ABL1

Proliferation of mature myeloid cells; Philadelphia chromosome t(9;22) translocation.

MDS

SF3B1, del(7q)3,5,16,83,85

SF3B1, del(7q)

TET2, SRSF2, ASXL1, DNMT3A, RUNX1, U2AF1, EZH2

Morphologic dysplasia; <5% BM blasts; <2% PB blasts; ≥1 cytopenia; no cytoses

del(5q) 3,5,16,83,85

del(5q)

TET2, SRSF2, ASXL1, DNMT3A, RUNX1, U2AF1, EZH2

Morphologic dysplasia; <5% BM blasts; <2% PB blasts; ≥1 cytopenia; possible thrombocytosis

EB5,21,83,86

SF3B1, del(5q), del(7q)

TET2, SRSF2, ASXL1, DNMT3A, RUNX1, U2AF1, EZH2

Morphologic dysplasia; 5–9% BM blasts; 2–9% PB blasts; ≥1 cytopenia; no cytoses

TP533,5,83,85,86

Multi-hit TP53

Del(17p)

Morphologic dysplasia; 0–9% BM and PB blasts; ≥1 cytopenia

MDS/AML5,21,86

SF3B1, del(5q), del(7q)

TET2, SRSF2, ASXL1, DNMT3A, RUNX1, U2AF1, EZH2

10–19% BM or PB blasts

AML

Gene or Chromosome3,5,18,41,83,85–87

NPM1, DNMT3A, FLT3

NRAS, KRAS, KIT, SF3B1, ZRSR2, U2AF1, SRSF2, IDH1, IDH2, TET2, ASXL1, RUNX1, GATA2, CEBPA, BCOR, EZH2, WT1

Clonal expansion of myeloid precursors with ≥ 20% blasts in BM or PB; inhibition of normal hematopoiesis, causing cytopenias; variable differentiation in myeloid lineages

APL5,18,83,85–87

PML/RARA

FLT3-ITD, FLT3-D835, NRAS, KRAS, DNMT3A, IDH1/2, TET2, ASXL1

Severe bleeding; coagulopathy due to DIC; promyelocytes dominate BM

TP533,5,18,85–87

Multi-hit TP53

-

Complex karyotypes; associated with poor prognosis and resistance to standard chemotherapy

Myelodysplasia-related3,5,18,21,83,86,87

TP53, RUNX1, ASXL1, EZH2, STAG2

SF3B1, SRSF2, U2AF1, ZRSR2

Arises from MDS; characterized by dysplasia in ≥ 50% of cells in at least 2 lineages

t-AML5,16,18,83

NPM1, DNMT3A, FLT3

-

Previously treated with leukemogenic therapies

Secondary AML5,16,18,87

ASXL1, SRSF2,

SF3B1, U2AF1, ZRSR2,

EZH2, BCOR, STAG2

Arises from antecedent hematologic disorder

MDS/MPN

CMML5,83,86

SRSF2, TET2, ASXL1

SETBP1, NRAS/KRAS, RUNX1, CBL, EZH2, NPM1

Monocytosis; cytopenia; presence of clonality; <20% blasts in PB and BM

RS 5,83

SF3B1

TET2, SRSF2, U2AF1

Ring sideroblasts present in BM; dyserythropoiesis; anemia​

aCML5,21,83

*BCR/ABL1−

SETBP1, ASXL1, EZH2, NRAS, KRAS

Persistent leukocytosis; <20% blasts in PB; dysgranulopoiesis; no BCR/ABL1 fusion